![]() ![]() This page documents the various methods in which users may generate the Array Land Vectors (ALVs) that house the different data types supported in Land. 1.10.16.8 MergeGeneLevelNumericData generate gene level data from ALV filesĬustomers that have an on site Array Server have the ability to build their own lands.1.10.16.7 ConvertPgdCopyNumber converts copy number variants from a PGD excel report file.1.10.16.6 ConvertPgdSomaticMutation converts somatic mutation from a PGD excel report file.1.10.16.5 ConvertAffymetrix500KCnvCel convert/combine Affymetrix SNP/CNV.1.10.16.4 ConvertCnvSegmentOsobj converts Copy Number in osobj format.1.10.16.3 GenerateGistic2Markers generate marker files for GISTIC analysis.1.10.16.2 BuildServerMatrix generate Data Matrix file for land.1.10.16.1 BuildClinical to build clinical subsystem for a land.1.10.15 +ConvertMafFile converts MAF mutation file=.1.10.13 ConvertCombinedFusion converts combined RNA-Seq fusion results.1.10.12 ConvertPairedEndFusion converts RNA-Seq paired end fusion results.1.10.11 ConvertFusion converts RNA-Seq fusion results.1.10.10 ConvertNgs2tex converts RNA-Seq transcript/gene level counting files.1.10.9 ConvertGeneBas converts RNA-Seq gene BAS file.1.10.8 ConvertNgsmpv converts RNA-Seq/DNA-Seq Matched variation files.1.10.7 ConvertExonJunction convert ExonJunction ngsexj2 file.1.10.6 ConvertNgsm2s convert Mutation+SNP file.1.10.5 ConvertNgsmut3 converts RNA-Seq/DNA-Seq mutation files.1.10.3 ConvertExpression2Txt converts expression values from TWO text files.1.10.2.1 ConvertExpressionTxt converts expression values from a text file with SynonymousID.1.9.1 MergeVirusCounts and Merge16SMicrobialCounts generate Data Matrix file for land.1.7.1 ConvertMethylation450 converts Methylation report files to ALV.1.6.1 Convert miRNA-seq BAM files to ALV.1.5.2 ConvertAffymetrixCnvCel converts Affymetrix SNP/CNV.1.5.1 ConvertCnvSegmentFile converts a text file containing segment information.1.4.2 ConvertVcfFile converts Vcf files to ALV.1.4.1 ConvertMutationTxtFile converts mutation text file.1.2.4 BuildProbeMapping to build mapping files for Affy/Agilent probes.1.2.3 ConvertExpressionTxt converts expression values from a text file with probe/probeset mapping file.1.2.2 ConvertExpressionOsobj converts Expression OmicData in osobj format.1.2.1 ConvertAffymetrixCel converts Affymetrix. ![]()
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